Been absent a few days- Work slammed me again.
I remember that thread.
For the Big 3, you're just copying the factory layout but with larger gauge wire. You replace (or supplement, if you want) the three main factory connections- alternator to battery (charge wire), battery to engine (ground) and engine to frame (ground). Referring to the pic below, the charge wire connects the positive stud on the alternator to where it is terminated at the battery, under the nut on the left side of the 175A fuse. It goes to the left from the fuse, drops down deeper into the engine bay and comes back up over the valve cover on its way to the alternator. You can see the red cable where the loom is missing near the oil filler neck. The red (looks pink in the pic) unfused one clamped to the battery positive post is going to the starter. This one doesn't have to be upgraded. The other one under that lefthand nut on the fuse, in the loom, goes to the firewall and across to the fuse & relay center. This one also doesn't have to be upgraded.
View attachment 411775
While you're at it, and since it'll be replaced with a larger cable, I'd suggest you repurpose the stock 4 gauge ground cable. It runs from the battery negative post to the front of the passenger cylinder head. You can leave it on the cylinder head. Cut off the battery post clamp end and crimp on a lug to bolt it to the sheet metal of the body. I drilled a hole in the pinch weld on the cowl and bolted mine there. This will supplement that braided ground on the driver side that goes from the firewall to the nearly inaccessible stud on the back of the driver side cylinder head (or is it on the bell housing?) This will improve the ground connection from the body to the frame/engine (electrically synonymous at this point), making yours a "Big 4" upgrade.