The long tube headers will exit right about the front of your trans pan, maybe a little further back. You should have room for a small cat on each side. where it will tight is where the drivers side crosses over to the pass side. if it's a 2wd you can take your drivers side and go over your X member and take a 90 over to your pass side. from there you can run a 2 into 1. Or you can run 2 mufflers side by side and then out to your final exit point. if its a 4x4 it will be tight coming off the pass cat into a 90 over to the pass side and then out from there.
this should give you a good idea of how it could go. I would say just lay under your truck and give it a good look. there might be other ways to do it. you don't have to limit yourself to the muffler shop bending machine. you can get mandrel bent 90's, 45's, U bends. then just cut and tack it up and then finish weld it on the ground or take it to a shop and have it finished. just make sure your tacks are good and strong because when you take it off the truck to finish weld you dont want it to get distorted.
As far as tailpipes go you can run both on one side, two out the back (shotgun style) or my favorite one out each corner with just a bit of a nice stainless tip showing.
I hope this helps.